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BIOPOLYMER Intelligence

Overview / Chemistry

Chemistry of bio-based polymers

Drawn from SMILES with RDKit at build time; stereochemistry checked against InChIKeys. Natural polymers are shown by a representative unit, never an invented full structure.

Every monomer, feedstock and catalyst below matches its PubChem record (InChIKey). Repeat units carry * attachment points and repeat brackets; the build caps and hydrolyses each one and checks that the products are exactly the listed monomers — so a repeat unit can never silently carry the wrong stereocentre. A structure that fails verification is not published.
01 / HOW BIO-BASED POLYMERS ARE MADE

How bio-based polymers are made

Four production logics cover almost every polymer on this site. They differ in where the chemistry happens - in a fermenter, inside a cell, over a catalyst, or on a polymer nature already built.

Four ways bio-based polymers are madeFour columns, each a chain of four boxes from raw material to polymer: fermentation then chemical polymerisation (PLA), polymerisation inside the cell (PHA), chemocatalysis then polycondensation (PEF), and modification of natural polymers. Conceptual.Fermentation + chemistrysugarlactic acidlactidePLA (ROP)Made inside the cellsugar / oil / wasteacetyl-CoA(R)-3HB-CoAPHA granulesChemocatalysis + condensationfructoseHMFFDCA + MEGPEFModify a natural polymerwood / cropscellulose · starchesterify · plasticisemodified polymer
Conceptual schematic. Intermediates are named, not drawn; verified structures are in the library below.

Fermentation-derived monomer, chemical polymerisation

Microbes ferment sugars to lactic acid. Lactic acid is converted to lactide, its cyclic dimer, and lactide is polymerised by ring-opening polymerisation (ROP) to high-molar-mass PLA. Most PLA chemistry - stereochemistry, molar mass, end groups - is set in this chemical step, not in the fermenter. [Auras 2004; Dechy-Cabaret 2004; Kowalski 2000]

monomer

L-Lactic acid

monomer

L-Lactide

n
repeat unit

Poly(L-lactide)

Polymer made inside the cell

In PHB biosynthesis, β-ketothiolase (PhaA) joins two acetyl-CoA into acetoacetyl-CoA, acetoacetyl-CoA reductase (PhaB) reduces it to (R)-3-hydroxybutyryl-CoA, and PHA synthase (PhaC) polymerises that monomer. The cell stores the polyester as intracellular granules, which are extracted after fermentation. Feeding different substrates or engineered pathways gives copolymers. [John 1996; Sudesh 2000; Chen 2009; Bugnicourt 2014]

monomer

(R)-3-Hydroxybutanoic acid

n
repeat unit

Poly[(R)-3-hydroxybutyrate] (PHB)

Chemocatalytic monomer, polycondensation

Sugars are dehydrated to 5-hydroxymethylfurfural (HMF), which is oxidised to 2,5-furandicarboxylic acid (FDCA) or its dimethyl ester (FDME). FDCA or FDME is then esterified or transesterified with ethylene glycol and polycondensed to PEF; solid-state polymerisation is often used afterwards to raise molar mass. [van 2013; Eerhart 2012; Sousa 2015; Papageorgiou 2014]

feedstock

5-Hydroxymethylfurfural (HMF)

monomer

2,5-Furandicarboxylic acid (FDCA)

monomer

Dimethyl 2,5-furandicarboxylate (FDME)

monomer

Ethylene glycol (MEG)

n
repeat unit

Poly(ethylene 2,5-furandicarboxylate) (PEF)

Modification of natural polymers

Cellulose is esterified or etherified; starch is plasticised into thermoplastic starch; lignin is functionalised or broken into monomers such as vanillin. The backbone is built by the plant - the process changes its side groups or its physical state. [Klemm 2005; Zhang 2014; Upton 2016]

representative unit

β-D-Glucopyranose

representative unit

α-D-Glucopyranose

representative unit

Coniferyl alcohol

Quoted support (5)
  • beta-ketothiolase (phaA), acetoacetyl-CoA reductase (phaB), and polyhydroxyalkanoate synthase (phaC) catalyze the production of aliphatic polyester poly-d-(-)-3-hydroxybutyrate (PHB) from acetyl-CoA [John 1996]
  • the conversion of fructose into Furanics and subsequent recovery and upgrading [Eerhart 2012]
  • innovative cellulose esters and ethers [Klemm 2005]
  • Starch exhibits usable thermoplastic properties when plasticizers, elevated temperatures, and shear are present. [Zhang 2014]
  • polymers from lignin-derived chemicals, such as vanillin [Upton 2016]
02 / POLYMERISATION MECHANISMS

Polymerisation mechanisms

How chains grow decides what molar mass is reachable, what catalyst residues remain, and whether the polymer can be taken back to monomer.

Four polymerisation mechanisms as shape diagramsStep-growth: two different end-functional units join and release a small molecule. Ring-opening: a ring opens onto a chain end at a catalyst. ROCOP: an epoxide and CO2 alternate. Polyaddition: units join without a by-product. Conceptual.Step-growth+− H₂O / MeOHequilibrium: remove by-productlong chains only atvery high conversionRing-opening (ROP)ringM–ORstrain drives it; above theceiling temperature, it reversesROCOPepoxide+ CO₂strict alternationgives polycarbonatesPolyaddition+no by-productisocyanate + polyol, orcyclic carbonate + amine
Conceptual illustration, not chemical structures.

Step-growth polycondensation

Diacids (or diesters) react with diols or diamines, releasing water or methanol. The reaction is an equilibrium, so the by-product must be removed to drive it forward. Carothers showed that chain length depends steeply on conversion - long chains only form at very high conversion - which is why PEF, PBS and polyamides need long, hot, vacuum-driven finishing steps. [Carothers 1936; Xu 2010; Papageorgiou 2014]

Ring-opening polymerisation (ROP)

Strained cyclic monomers such as lactide and lactones open and add to a growing chain. With Sn(Oct)₂, the active species is a tin alkoxide formed with an alcohol co-initiator, and the monomer inserts into the Sn–O bond (coordination–insertion). Ring strain drives the reaction; if strain is low, a ceiling temperature exists above which depolymerisation wins. That equilibrium is what makes chemical recycling to monomer possible, as shown for γ-butyrolactone polymers. [Kowalski 2000; Dechy-Cabaret 2004; Hong 2016; Coates 2020]

monomer

L-Lactide

catalyst

Tin(II) 2-ethylhexanoate (Sn(Oct)₂)

monomer

α-Methylene-γ-butyrolactone

Ring-opening copolymerisation (ROCOP)

Epoxides alternate with CO₂ (giving polycarbonates) or with cyclic anhydrides (giving polyesters) on metal catalysts. Byrne et al. made poly(limonene carbonate) from limonene oxide and CO₂ with more than 99 % carbonate linkages. [Byrne 2004; Grignard 2019]

feedstock

(R)-Limonene

monomer

Propylene oxide

Polyaddition

Polyols add to isocyanates to form urethanes without by-products. In non-isocyanate polyurethanes (NIPU), amines open cyclic carbonates to give hydroxyurethanes. [Rokicki 2015]

monomer

Pentamethylene diisocyanate (PDI)

monomer

Glycerol carbonate

Dynamic covalent networks

In vitrimers, covalent bonds in the network exchange at high temperature, so a crosslinked material can be reshaped while staying a network. [Montarnal 2011; Fortman 2018]

Quoted support (4)
  • Sn(Oct) 2 itself does not play an active role in the polymerization [Kowalski 2000]
  • The copolymer contains >99% carbonate linkages [Byrne 2004]
  • poly(hydroxy‐urethane)s, based upon multicyclic carbonates and aliphatic amines [Rokicki 2015]
  • A polymer shows thermoset-like stability while displaying melt processability like that of a thermopolymer. [Montarnal 2011]
03 / STRUCTURE → PROPERTY

Structure → property

A few structural features explain most of the differences between bio-based polymers - and between them and the fossil polymers they replace.

Stereochemistry and crystallinity

PLA made mostly from L-lactide can crystallise; adding D-units lowers crystallinity. Blending poly(L-lactide) with poly(D-lactide) forms a stereocomplex with improved mechanical properties, heat resistance and hydrolysis resistance. [Tsuji 2005; Saeidlou 2012]

n
repeat unit

Poly(L-lactide)

monomer

L-Lactic acid

Furan versus benzene ring

PEF swaps PET's benzene ring for a furan ring. Burgess et al. found that furan ring-flipping is suppressed, which slows gas diffusion and explains PEF's much lower permeability despite similar gas solubility. [Burgess 2014]

monomer

2,5-Furandicarboxylic acid (FDCA)

monomerfossil/drop-in benchmark

Terephthalic acid

n
repeat unit

Poly(ethylene 2,5-furandicarboxylate) (PEF)

Side-chain length in PHA copolymers

Adding 3-hydroxyhexanoate or longer side-chain units to PHB lowers crystallinity and melting temperature, which widens the processing window and adds ductility. HV and 4HB units are used to similar ends. [Noda 2004; Bugnicourt 2014]

n
repeat unit

Poly[(R)-3-hydroxybutyrate] (PHB)

monomer

3-Hydroxyvaleric acid

monomer

4-Hydroxybutanoic acid

monomer

3-Hydroxyhexanoic acid

Hydrogen bonding in polyamides

Amide groups hydrogen-bond between chains, raising melting point and stiffness - and attracting water. The spacing of amide groups (PA11 versus PA6, for example) therefore sets the balance between thermal performance and moisture uptake. [Winnacker 2016]

n
repeat unit

Polyamide 11

Ester hydrolysis

Ester bonds can be cleaved by water. This one reaction governs both service durability in humid or hot conditions and the first step of biodegradation, which is why lifetime prediction for polyesters needs conditions, not just a material name. [Laycock 2017; Haider 2019]

Typical property values — sourced only

A value appears only when it is quoted verbatim from a cited reference (hover or read the quote under it). Every other cell is ND — no sourced value yet. Values are never filled from memory or handbooks; grades, processing and test methods differ, so compare like with like.

PolymerTg (°C)Tm (°C)Tensile strength (MPa)Modulus (GPa)Elongation at break (%)HDT (°C)
PLANDND63“PLA is high in strength and modulus (63 MPa and 3.4 GPa, respectively) but brittle (strain at break 3.8%)” — Jiang 2006; neat PLA in a blend study; grade and test method in the paper3.4“PLA is high in strength and modulus (63 MPa and 3.4 GPa, respectively) but brittle (strain at break 3.8%)” — Jiang 2006; as above3.8“PLA is high in strength and modulus (63 MPa and 3.4 GPa, respectively) but brittle (strain at break 3.8%)” — Jiang 2006; as aboveND
PHBNDNDNDNDNDND
PHBVNDNDNDNDNDND
PEFNDNDNDNDNDND
PA11NDNDNDNDNDND
bio-PBSNDNDNDNDNDND

ND = no sourced value (not disclosed in the references held). Contribute a value by opening a correction with a DOI and the quoted passage.

Quoted support (3)
  • Stereocomplexation enhances the mechanical properties, the thermal‐resistance, and the hydrolysis‐resistance of PLA‐based materials. [Tsuji 2005]
  • Unlike the active phenyl ring-flipping mechanism in PET, furan ring-flipping is greatly suppressed [Burgess 2014]
  • The reduced crystallinity provides the ductility and toughness required for many plastics applications. [Noda 2004]
04 / BLENDS AND COPOLYMERS

Blends and copolymers

Most commercial bio-based grades are formulations. Blending trades one property against another; compatibilisation decides whether the trade works.

Why PLA/PBAT and PLA/PHA blends exist

PLA is stiff and strong but brittle. Jiang et al. blended it with flexible PBAT and found an immiscible two-phase system in which elongation and toughness rose sharply while strength and modulus fell. Noda et al. found that a small amount of ductile PHA copolymer substantially toughens PLA without losing optical clarity. [Jiang 2006; Noda 2004; Nagarajan 2016]

n
repeat unit

Poly(L-lactide)

n
repeat unit

Poly[(R)-3-hydroxybutyrate] (PHB)

Miscibility and compatibilisation

Most polymer pairs are immiscible. Copolymerisation, grafting, transesterification and reactive coupling agents (including chain extenders in reactive extrusion) are used to bind the phases and control morphology. Nucleating agents and plasticisers tune crystallisation and flexibility. [Imre 2013; Raquez 2013]

Quoted support (5)
  • The blend comprised an immiscible, two-phase system [Jiang 2006]
  • the blend showed decreased tensile strength and modulus; however, elongation and toughness were dramatically increased [Jiang 2006]
  • The toughness of PLA is substantially increased without a reduction in the optical clarity of the blend. [Noda 2004]
  • Copolymerization, grafting, trans-esterification, the use of reactive coupling agents have all been utilized with success [Imre 2013]
  • blending which allows considerable improvement in the impact resistance of brittle polymers [Imre 2013]
05 / THE PROCESSING WINDOW

The processing window

Several bio-based polyesters are sensitive in the melt. Lab results only transfer to production if drying, residence time and crystallisation are controlled.

Thermal and hydrolytic degradation in the melt

Residual moisture hydrolyses ester bonds at melt temperature, cutting molar mass, so polyesters such as PLA are dried before processing and residence time is kept short. For PHB-rich PHAs, melting and thermal decomposition are close together; lowering the melting point by copolymerisation widens the window. [Lim 2008; Noda 2004]

Slow crystallisation and annealing

PLA crystallises slowly, so moulded parts are often largely amorphous and soften near the glass transition. Nucleating agents, mould temperature and annealing raise crystallinity and heat resistance. [Saeidlou 2012; Nagarajan 2016; Lim 2008]

Quoted support (2)
  • The lower T m makes the material easier to process, as the thermal decomposition temperature of PHAs is then relatively low. [Noda 2004]
  • Morphology and crystallinity that individually contribute to toughness and heat resistance have also been elucidated. [Nagarajan 2016]
06 / END OF LIFE IS NOT ONE ATTRIBUTE

End of life is not one attribute

Bio-based origin, biodegradability, compostability and recyclability are separate properties. None can be inferred from another, and this site records each one separately.

Bio-basedFossil-based
Biodegradable
PLAindustrial compost; slow in nature, not in seawaterBy being truly biodegradable, derived from renewable resources Auras 2004
PHAgrade- and environment-specifichigh biodegradability in different environments, not just in composting plants Bugnicourt 2014
This quadrant exists - the Commission states that plastics designed to biodegrade can be fossil-based - but no cited source yet names a specific fossil-based biodegradable polymer, so none is placed. — European Commission, COM(2022) 682 final, retrieved 20 Oct 2026
Not biodegradable
bio-PE (drop-in)same polymer as fossil PE (Siracusa & Blanco); PE is recalcitrant to biodegradation (Mohanan et al.)bio-based polymers analogous to petroleum-derived ones Siracusa 2020 · Petroleum-derived (petro-)polymers such as polyethylene (PE), polyethylene terephthalate (PET) Mohanan 2020
PET, PErecalcitrant to natural biodegradationare extremely recalcitrant to natural biodegradation pathways Mohanan 2020
Origin and biodegradability are independent. Examples are placed only where a cited source supports the placement; biodegradation also depends on the environment.

Bio-based is not biodegradable

The European Commission states that bio-based plastics are not necessarily biodegradable or compostable, and that biodegradable and compostable plastics may be made from biological or fossil raw materials. Naturvårdsverket adds that bio-based plastic may be designed to be as durable as any other plastic.

Biodegradation depends on the environment

Haider et al. report that PLA is basically non-degradable in seawater and that biodegradation rates depend on the environment the material ends up in. McKeown and Jones describe industrial composting of PLA as giving water and carbon dioxide, but a slow biodegradation rate in the natural environment. [Haider 2019; McKeown 2020]

Industrial versus home compost

Compliance with industrial composting standards does not imply decomposition in home composting. The Commission notes a European standard for industrially compostable packaging but none for home composting.

Recycling streams

Mechanical recycling keeps the polymer; chemical recycling takes it back to monomers or platform chemicals. For PLA, McKeown and Jones review chemical recycling to lactide, lactic acid and esters as a way to keep material value. [McKeown 2020; Coates 2020]

Quoted support (3)
  • poly(lactic acid) is basically non‐degradable in seawater [Haider 2019]
  • industrial composting of PLA affords water and carbon dioxide only [McKeown 2020]
  • chemical recycling, which affords monomers and useful platform chemicals [McKeown 2020]
STRUCTURE LIBRARY

Structure cards by route

Role labels: monomerrepeat unitrepresentative unitfeedstockcatalyst. A monomer is not its repeat unit: the repeat unit is what the chain is made of after polymerisation.

PLA, lactide copolymers & blends

monomer

L-Lactic acid

Fermentation product and parent hydroxy acid of PLA; the (S)-enantiomer.

C[C@H](O)C(=O)O
monomer

L-Lactide

Cyclic dimer of L-lactic acid; ring-opening polymerisation of lactide gives high-molar-mass PLA.

C[C@H]1C(=O)O[C@H](C(=O)O1)C
n
repeat unit

Poly(L-lactide)

Repeat unit of PLLA. Hydrolysis returns L-lactic acid, which fixes the stereocentre as (S).

*O[C@@H](C)C(*)=O
catalyst

Tin(II) 2-ethylhexanoate (Sn(Oct)₂)

Classic catalyst for lactide ROP; forms the active tin alkoxide with an alcohol co-initiator.

CCCCC(CC)C(=O)[O-].CCCCC(CC)C(=O)[O-].[Sn+2]

PHA family & copolymers

monomer

(R)-3-Hydroxybutanoic acid

Hydroxy acid of PHB; bacteria polymerise it from (R)-3-hydroxybutyryl-CoA.

C[C@@H](O)CC(=O)O
n
repeat unit

Poly[(R)-3-hydroxybutyrate] (PHB)

Repeat unit of PHB. Hydrolysis returns (R)-3-hydroxybutanoic acid.

*O[C@H](C)CC(*)=O
monomer

3-Hydroxyvaleric acid

Hydroxy acid of the HV comonomer unit in PHBV (stereocentre not specified here).

CCC(O)CC(=O)O
monomer

4-Hydroxybutanoic acid

Hydroxy acid of the 4HB unit in P3HB4HB copolymers.

OCCCC(=O)O
monomer

3-Hydroxyhexanoic acid

Hydroxy acid of the HHx unit in PHBHHx; its propyl side chain lowers crystallinity.

CCCC(O)CC(=O)O

PEF and furan polyesters

feedstock

5-Hydroxymethylfurfural (HMF)

Sugar-derived platform chemical; oxidation gives FDCA.

O=Cc1ccc(CO)o1
monomer

2,5-Furandicarboxylic acid (FDCA)

Diacid of PEF and other furanoate polyesters.

OC(=O)c1ccc(o1)C(=O)O
monomer

Dimethyl 2,5-furandicarboxylate (FDME)

Diester alternative to FDCA for transesterification routes to PEF.

COC(=O)c1ccc(o1)C(=O)OC
monomer

Ethylene glycol (MEG)

Diol of PEF and PET; can be fossil- or bio-based.

OCCO
monomer

1,3-Propanediol

Diol of poly(trimethylene furanoate) (PTF).

OCCCO
n
repeat unit

Poly(ethylene 2,5-furandicarboxylate) (PEF)

Repeat unit of PEF. Hydrolysis gives ethylene glycol and FDCA.

*OCCOC(=O)c1ccc(o1)C(*)=O
monomerfossil/drop-in benchmark

Terephthalic acid

Fossil/drop-in benchmark: the PET diacid that FDCA replaces in PEF.

OC(=O)c1ccc(cc1)C(=O)O

Other bio-based polyesters

monomer

Succinic acid

Diacid of PBS and PBSA; available from fermentation or fossil routes.

OC(=O)CCC(=O)O
monomer

1,4-Butanediol

Diol of PBS and PBAT.

OCCCCO
monomer

Adipic acid

Aliphatic diacid of PBAT and PBSA.

OC(=O)CCCCC(=O)O
n
repeat unit

Poly(butylene succinate) (PBS)

Repeat unit of PBS. Hydrolysis gives 1,4-butanediol and succinic acid.

*OCCCCOC(=O)CCC(*)=O
monomer

Isosorbide

Rigid, sugar-derived bicyclic diol (1,4:3,6-dianhydro-D-glucitol) for polycarbonates and polyesters.

O[C@@H]1CO[C@@H]2[C@@H](O)CO[C@H]12
monomer

α-Methylene-γ-butyrolactone

Exo-methylene lactone studied as a monomer for chemically recyclable polymers.

C=C1CCOC1=O

Bio-based polyamides

monomer

11-Aminoundecanoic acid

Castor-derived amino acid monomer of PA11.

NCCCCCCCCCCC(=O)O
n
repeat unit

Polyamide 11

Repeat unit of PA11. Hydrolysis returns 11-aminoundecanoic acid.

*NCCCCCCCCCCC(*)=O
feedstock

Ricinoleic acid

Main fatty acid of castor oil; source of PA11 and sebacic-acid chemistry and of bio-polyols.

CCCCCC[C@@H](O)C/C=C\CCCCCCCC(=O)O
monomer

Sebacic acid

C10 diacid for PA610 and PA1010.

OC(=O)CCCCCCCCC(=O)O
monomer

Cadaverine (1,5-diaminopentane)

Bio-produced diamine for PA 5.X polyamides.

NCCCCCN
monomer

1,10-Decanediamine

C10 diamine for PA1010 and PA10.X polyamides.

NCCCCCCCCCCN

Isosorbide & CO₂-based polycarbonates

monomer

Isosorbide

Rigid, sugar-derived bicyclic diol (1,4:3,6-dianhydro-D-glucitol) for polycarbonates and polyesters.

O[C@@H]1CO[C@@H]2[C@@H](O)CO[C@H]12
monomer

Propylene oxide

Epoxide comonomer with CO₂ for poly(propylene carbonate) (stereocentre not specified).

CC1CO1
feedstock

(R)-Limonene

Citrus terpene; its oxide copolymerises with CO₂ to poly(limonene carbonate).

CC1=CC[C@@H](CC1)C(=C)C

Bio-polyurethanes & NIPU

feedstock

Ricinoleic acid

Main fatty acid of castor oil; source of PA11 and sebacic-acid chemistry and of bio-polyols.

CCCCCC[C@@H](O)C/C=C\CCCCCCCC(=O)O
monomer

Glycerol carbonate

Five-membered cyclic carbonate; amines open it to hydroxyurethanes (NIPU).

O=C1OCC(CO)O1
monomer

Pentamethylene diisocyanate (PDI)

Aliphatic diisocyanate that can be made from bio-based cadaverine.

O=C=NCCCCCN=C=O
representative unit

Coniferyl alcohol

Representative lignin monolignol (G unit); lignin itself has no single defined structure.

OC/C=C/c1ccc(O)c(OC)c1

Bio-based thermosets & vitrimers

feedstock

Vanillin

Lignin-derivable aromatic aldehyde; precursor of bio-based epoxy monomers.

COc1cc(C=O)ccc1O
monomer

Itaconic acid

Fermentation-derived unsaturated diacid for curable polyesters.

C=C(CC(=O)O)C(=O)O
monomer

Furfuryl alcohol

Furan monomer for furan resins and Diels–Alder networks.

OCc1ccco1
representative unit

Cardanol (triene component)

Representative: cardanol from cashew nut shell liquid is a mixture; shown is the C15 triene component.

C=CC/C=C\C/C=C\CCCCCCCC1=CC(=CC=C1)O

Cellulose, lignin, starch, protein & chitosan polymers

representative unit

β-D-Glucopyranose

Representative unit of cellulose (β-1,4-linked D-glucose); not the polymer itself.

OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1O
representative unit

α-D-Glucopyranose

Representative unit of starch (α-linked D-glucose); not the polymer itself.

OC[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@@H]1O
representative unit

Coniferyl alcohol

Representative lignin monolignol (G unit); lignin itself has no single defined structure.

OC/C=C/c1ccc(O)c(OC)c1
representative unit

D-Glucosamine

Representative unit of chitosan (anomeric centre unspecified); not the polymer itself.

OC[C@H]1OC(O)[C@H](N)[C@@H](O)[C@@H]1O
representative unit

L-Lysine

Representative amino acid for protein-based plastics; proteins are not drawn as full structures.

NCCCC[C@H](N)C(=O)O

Drop-ins, mass balance & biocomposites

monomer

Ethylene glycol (MEG)

Diol of PEF and PET; can be fossil- or bio-based.

OCCO
monomerfossil/drop-in benchmark

Terephthalic acid

Fossil/drop-in benchmark: the PET diacid that FDCA replaces in PEF.

OC(=O)c1ccc(cc1)C(=O)O

Structure data: structures.json · CSV. Suggest a molecule via the structure template (SMILES and a citable source required).